Gene search

Users can indicate

1. Data type: gene or mRNA
2. genome: a specific genome assembly/annotation. Multiple selection is supported and any for all genomes.
3. Chromosome/start and stop: genomic coordinates on a specific chromosome/contig/scaffold in base pairs (bp).
4. Gene/Transcript name: a locus tag. Multiple locus tags can be submitted by uploading a text file using the browse button (one locus tag by line).
5. Functional information
   1. Orthogroup: a orthogroups number resulting from clustering with Orthofinder
   2. Keyword: a text as a keyword that will be searched in the gene annotation description, Interpro ids, GO terms etc.

All the search categories below can be combined

The form will return a table with a number of elements that can be customized by clicking on view.  The table can be downloaded at the TSV, CSV format and the sequences at the FASTA format.

For more information related to gene search usage, please look at this documentation.