This tool was designed to test the specificity of any primer pair on the musa genome by using BLAST. Make sure primers have the same id in both cases. As a result, a table displays all tested primers with primer name and positions, location on chromosome, amplicon size and number of hits on the musa genome. If the primer pair is really specific, this status is clearly marked as ‘ok’ in the table.
Gigwa is a web-based tool for the exploration of large amounts of genotyping data.
Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with BLAST.
Look at gene expression (DEG)
Visualize data using an interactive genome browser.
Search for a gene by name, location, functional annotation keywords...
Search for highest similarity for your sequence of interest.
Look at metabolic pathways
Retrieve all syntenic blocks and genes for your regions of interest
Explore large chromosome structural variations in Musa diversity
Analyse your own transcriptomics data
Explore pangenome blocks using Panache
Visualize and explore chromosome structure paint with ancestral/parental origins
This tool allows to convert locus tags names between version of the genome assemblies. It supports conversion between v1 and v2 of the DH-Pahang assembly. You can search either by legacy identifiers (GSMUA_Achr3G27160_001) or by RefSeq identifiers (gene708).
Perform GO enrichment on list of genes