Credit: Gabriel Sachter-smith

Available Tools

Primer Blaster

This tool was designed to test the specificity of any primer pair on the musa genome by using BLAST. Make sure primers have the same id in both cases. As a result, a table displays all tested primers with primer name and positions, location on chromosome, amplicon size and number of hits on the musa genome. If the primer pair is really specific, this status is clearly marked as ‘ok’ in the table.

Synteny viewer

Retrieve all syntenic blocks and genes for your regions of interest

Crispor Tefor

CRISPOR is a program that helps design, evaluate and clone guide sequences for the CRISPR/Cas9 system.

MusaCyc

Look at metabolic pathways

Genomes