Available Tools
Primer Designer
Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with BLAST.
Panache
Explore pangenome blocks using Panache
RNA-Seq data analysis using Diane
Analyse your own transcriptomics data
RNA-Seq count display
Look at gene expression (DEG)
MusaCyc
Look at metabolic pathways
Locus Converter
This tool allows to convert locus tags names between version of the genome assemblies. It supports conversion between v1 and v2 of the DH-Pahang assembly. You can search either by legacy identifiers (GSMUA_Achr3G27160_001) or by RefSeq identifiers (gene708).
Synteny viewer
Retrieve all syntenic blocks and genes for your regions of interest
Primer Blaster
This tool was designed to test the specificity of any primer pair on the musa genome by using BLAST. Make sure primers have the same id in both cases. As a result, a table displays all tested primers with primer name and positions, location on chromosome, amplicon size and number of hits on the musa genome. If the primer pair is really specific, this status is clearly marked as ‘ok’ in the table.
Genomes
Musa acuminata (Maia oa)
The selected accession, named 'Maia Oa' belongs to the subspecies of Musa acuminata spp. zebrina native to south-east Asia.
The genome seque read more
Musa acuminata (Calcutta 4)
The selected accession, named Calcutta 4 belongs to the subspecies of Musa acuminata burmannica native to south-east Asia. According to MusaPedia, read more
Musa acuminata (Banksii)
The selected accession, named 'Banksii' belongs to the subspecies of Musa acuminata spp. banksii native to south-east Asia in Papua New Guinea. Ban read more
Musa troglodytarum (Fe'i bananas)
Karat (Musa troglodytarum L.) is an autotriploid Fe’i banana (TTT) collected from Kosrae of The Federated States of Micronesia.
kar read more
Musa beccarii
Musa beccarii, endemic to Borneo, is the only species in the Musa genus, including the economically important bananas and plantai read more
Ensete glaucum (Snow banana)
Ensete glaucum (2n=18) is cultivated as an ornamental plant, for its unique swollen bulbous base and large leaves. It is native from Asia with a la read more
Musa itinerans (Yunnan banana)
Musa itinerans, known also as Yunnan banana, is a close relative to both banana progenitors with wide distribution across subtropical Chin read more
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