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Summary
Abbreviation
M. balbisiana DH-PKW
Genus
Musa
Species
balbisiana
Common Name
DH-PKW
Description

The selected 'DH PKW' genotype belongs to the Musa balbisiana species that contributed the B-subgenome to cultivated allotriploid bananas. This is a doubled-haploid (DH) from M. balbisiana 'Pisang Klutuk Wulung' DH-PKW produced through anther culture and spontaneous chromosomes doubling (Assani A at al., 2003). This is the result of a project led by CATAS and BGI in collaboration with CIRAD.

This reference genome was obtained by PAC Bio, Illumina and HI-C technologies and published in the following article:

Wang Z, Miao H, Liu J, Yao X, Xu C, Zhao S, Fang X, Xu B, Jia C, Wang J, Zhang J, Li J, Xu Y, Wang J, Ma W, Wu Z, Yu L, Yang Y, Liu C, Guo Y, Sun S, Baurens FC, Martin G, Salmon F, Garsmeur O, Yahiaoui N, Hervouet C, Rouard M, Laboureau N, Habas R, Ricci S, Peng M, Guo A, Xie J, Li Y, Ding Z, Yan Y, Tie W, D’Hont A, Hu W, Jin Z. Musa balbisiana genome reveals subgenome evolution and functional divergence. Nature Plants 1 (2019) doi:10.1038/s41477-019-0452-6.

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Publication
Wang Z, Miao H, Liu J, Yao X, Xu C, Zhao S, Fang X, Xu B, Jia C, Wang J, Zhang J, Li J, Xu Y, Wang J, Ma W, Wu Z, Yu L, Yang Y, Liu C, Guo Y, Sun S, Baurens FC, Martin G, Salmon F, Garsmeur O, Yahiaoui N, Hervouet C, Rouard M, Laboureau N, Habas R, Ricci S, Peng M, Guo A, Xie J, Li Y, Ding Z, Yan Y, Tie W, D’Hont A, Hu W, Jin Z. Musa balbisiana genome reveals subgenome evolution and functional divergence. Nature Plants 1 (2019) doi:10.1038/s41477-019-0452-6.
Analyses
NameProgramDate Constructed
Whole Genome Assembly and Annotation of M. balbisiana DH PKW (version 1.1)MAKERJan 29th, 2019
OrthofinderDiamond, mafft, fasttreeNov 11th, 2019
InterPro (5.48-83.0) Annotations of DH-PKWInterProScanApr 23rd, 2021
Statistics
Statistics of genome assembly

Value

Estimated genome size (Mb)

554

Assembled genome size (Mb)

492.7

Unknown bases (Ns, Mb)

1.29

Contig N50 (Mb)

1.83

Scaffold N50 (Mb)

5.05

GC_rate (%)

37.90

Gene number

35,148