Overview
NameMa00_t04070.1
Unique NameMa00_t04070.1
TypemRNA
OrganismMusa acuminata (DH Pahang)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chrUn_randomchromosomechrUn_random:34241356..34241535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
manual_curation2015-04-05 .281687
Properties
Property NameValue
OriginCIRAD:GSMUA_AchrUn_randomT18770_001
Old locus tagGSMUA_AchrUn_randomG18770_001
NotePutative expressed protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ma00_g04070Ma00_g04070Musa acuminatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ma00_p04070.1Ma00_p04070.1Musa acuminatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2012051auto2012051Musa acuminataCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2012052auto2012052Musa acuminataexon


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ma00_t04070.1 ID=Ma00_t04070.1|Name=Ma00_t04070.1|organism=Musa acuminata|type=mRNA|length=180bp
ATGGTATCTGTTCAAGAACCAGTTGATGGAAAGCCTCCTCTTTATGGCCA
TGTCACGTTCTACTCATTGGCTACACTGTTACGTGTTCTAAATGGCAATG
TCAAGGTGAAGTTTATGACCCAAGGAAAACACCTTTGGGTTCGACGATTC
ATTCCAAAGAAAAAAAAGAATCAAGGATGA
back to top

protein sequence of Ma00_p04070.1

>Ma00_p04070.1 ID=Ma00_p04070.1|Name=Ma00_p04070.1|organism=Musa acuminata|type=polypeptide|length=60bp
MVSVQEPVDGKPPLYGHVTFYSLATLLRVLNGNVKVKFMTQGKHLWVRRF
IPKKKKNQG*
back to top

mRNA from alignment at chrUn_random:34241356..34241535-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ma00_t04070.1 ID=Ma00_t04070.1|Name=Ma00_t04070.1|organism=Musa acuminata|type=mRNA|length=180bp|location=Sequence derived from alignment at chrUn_random:34241356..34241535- (Musa acuminata)
ATGGTATCTGTTCAAGAACCAGTTGATGGAAAGCCTCCTCTTTATGGCCA TGTCACGTTCTACTCATTGGCTACACTGTTACGTGTTCTAAATGGCAATG TCAAGGTGAAGTTTATGACCCAAGGAAAACACCTTTGGGTTCGACGATTC ATTCCAAAGAAAAAAAAGAATCAAGGATGA
back to top

Coding sequence (CDS) from alignment at chrUn_random:34241356..34241535-

>Ma00_t04070.1 ID=Ma00_t04070.1|Name=Ma00_t04070.1|organism=Musa acuminata|type=CDS|length=180bp|location=Sequence derived from alignment at chrUn_random:34241356..34241535- (Musa acuminata)
ATGGTATCTGTTCAAGAACCAGTTGATGGAAAGCCTCCTCTTTATGGCCA
TGTCACGTTCTACTCATTGGCTACACTGTTACGTGTTCTAAATGGCAATG
TCAAGGTGAAGTTTATGACCCAAGGAAAACACCTTTGGGTTCGACGATTC
ATTCCAAAGAAAAAAAAGAATCAAGGATGA
back to top