Overview
NameMa00_t03810.1
Unique NameMa00_t03810.1
TypemRNA
OrganismMusa acuminata (DH Pahang)
Sequence length1005
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chrUn_randomchromosomechrUn_random:31335292..31340137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
manual_curation2015-04-05 .281687
Properties
Property NameValue
OriginRefSeq:rna25283
Old locus tagGSMUA_Achr7G16810_001
Old locus taggene18753
Previous locationchr7:17302307..17307152
NoteCoatomer subunit epsilon-1
Cross References
External references for this mRNA
DatabaseAccession
GeneID103992005
GenbankXM_009411555.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ma00_g03810Ma00_g03810Musa acuminatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ma00_p03810.1Ma00_p03810.1Musa acuminatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2011605auto2011605Musa acuminataCDS
CDS-auto2011606auto2011606Musa acuminataCDS
CDS-auto2011607auto2011607Musa acuminataCDS
CDS-auto2011608auto2011608Musa acuminataCDS
CDS-auto2011609auto2011609Musa acuminataCDS
CDS-auto2011610auto2011610Musa acuminataCDS
CDS-auto2011611auto2011611Musa acuminataCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2011612auto2011612Musa acuminataexon
exon-auto2011613auto2011613Musa acuminataexon
exon-auto2011614auto2011614Musa acuminataexon
exon-auto2011615auto2011615Musa acuminataexon
exon-auto2011616auto2011616Musa acuminataexon
exon-auto2011617auto2011617Musa acuminataexon
exon-auto2011618auto2011618Musa acuminataexon


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ma00_t03810.1 ID=Ma00_t03810.1|Name=Ma00_t03810.1|organism=Musa acuminata|type=mRNA|length=1005bp
ATGATTGCAGGCATTTCTTCCTTATCGTACGTCTTCCGCTCGACAATCGA
AGACGAAGCTGAAGCGGACACAAAGCCCCTCGACTTCTTTTCCCGGGCTC
TCGATCTCGATCGGAGGAACCACCACGAAGCGGCGGTGATGGCGGCGACC
CCCGATCTTCTCTTCGGCCTGCGCAACAGCTTCTACTTGGGCGCCTACCA
AGCGGCCATCAACAGCAGCGACATCCCCAACCTCCCCGCCGACGACGCCC
TCGAGCGCGATGTACTCGTCCACCGATCCTACATCGCACTCGGATCCTAC
CAGCTAGTCATCAATGAGATTGATTCGTCGGCTCCTACTGCTCTCCAGGC
CGTCAAATTGCTCGCCCTTTACCTCTCTGAAAACAAGAAGGCTGCTATTT
CAAGCCTCCAAGAATGGTTTAGTCATGCTGAAATAAGCAACAATCCCATT
CTTCGACTAATTGCCGGGACCATATACATGTATGAGCAAGACTACAACGA
GGCACTTAAGCATACCAACTCTGGGGGAAGTATGGAACTGCATGCTTTGA
ATGTTCAGATATTCATTAAGATGCACAGGTCAGACTATGCTGAGAAACAA
CTCAAGATCATGCAACAAATCGATGAGGACCATACACTTACACAACTTGC
AAATGCATGGTTGGATCTGGCAATGGGTGGTTCCAAGGTCCAGGAAGCAT
ATCTTATTTTTCAGGACTTCTCTGAGAAGTATCAGATGACTGGAACAATT
CTGAATGGCAAGGCTGTCTGTTGTATGCACATGAATCGCTTTGATGAGGC
TGAGTCCTTATTGCTCGAAGCACTGAACAAGGATGCAAAGGATGCAGAAA
CTCTGGCCAACCTTGCTGTGTGCAGTCTTCACCTAGGCAAACCTTCATCA
CGATATCTCAATCAGTTGAAGTTGTCACATCCTGACCATATGCTTGTTAG
ATGTCTAGCATCCGCTGAAGACAACTTTGATAGAGCTGTTCAATCCATTG
CATGA
back to top

protein sequence of Ma00_p03810.1

>Ma00_p03810.1 ID=Ma00_p03810.1|Name=Ma00_p03810.1|organism=Musa acuminata|type=polypeptide|length=335bp
MIAGISSLSYVFRSTIEDEAEADTKPLDFFSRALDLDRRNHHEAAVMAAT
PDLLFGLRNSFYLGAYQAAINSSDIPNLPADDALERDVLVHRSYIALGSY
QLVINEIDSSAPTALQAVKLLALYLSENKKAAISSLQEWFSHAEISNNPI
LRLIAGTIYMYEQDYNEALKHTNSGGSMELHALNVQIFIKMHRSDYAEKQ
LKIMQQIDEDHTLTQLANAWLDLAMGGSKVQEAYLIFQDFSEKYQMTGTI
LNGKAVCCMHMNRFDEAESLLLEALNKDAKDAETLANLAVCSLHLGKPSS
RYLNQLKLSHPDHMLVRCLASAEDNFDRAVQSIA*
back to top

mRNA from alignment at chrUn_random:31335292..31340137+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ma00_t03810.1 ID=Ma00_t03810.1|Name=Ma00_t03810.1|organism=Musa acuminata|type=mRNA|length=4846bp|location=Sequence derived from alignment at chrUn_random:31335292..31340137+ (Musa acuminata)
GATGATTGCAGGCATTTCTTCCTTATCGTACGTCTTCCGCTCGACAATCG AAGACGAAGCTGAAGCGGACACAAAGCCCCTCGACTTCTTTTCCCGGGCT CTCGATCTCGATCGGAGGAACCACCACGAAGCGGCGGTGATGGCGGCGAC CCCCGATCTTCTCTTCGGCCTGCGCAACAGCTTCTACTTGGGCGCCTACC AAGCGGCCATCAACAGCAGCGACATCCCCAACCTCCCCGCCGACGACGCC CTCGAGCGCGATGTACTCGTCCACCGATCCTACATCGCACTCGGATCCTA CCAGGTTCCCCTTTTCTCCTTCGGATCTCTTCTTATTGATCAAGGATCTC GATCTATGATCGGTTTGTCGGTTTCCTTGCAGCTAGTCATCAATGAGATT GATTCGTCGGCTCCTACTGCTCTCCAGGCCGTCAAATTGCTCGCCCTTTA CCTCTCTGAAAACAAGGTTCAGTCTTTTATTTCCACCCCTCTGTTTTTAT CGGATTTCGGATTGATTTAGGTTTGGTTTCAGATATCTTGATCTTGTTTC TTCGGATCTGGGATGTGGAAATGATGGTTCAAATGTTTAGATCTTATTGA AATCCTTCTAAATCTTCCTTGGGTTTCTTTATGGTTAGTGCTTTCAAAGA GTAATTTTAGTTGATAAGAAAATCTTTCTCATCTGTCCTTCGCGTTGTTG GATATGCACAATATTTTTCCGGGAAGGCACTCATGACAAATGATACTCTG TCCCTTCAGCTTACTGAAGGCACAAAATTATTCAACATGTTAAAATCAAA TTATTGAACTTGACAACCGCATGATCAGATTTTAGTGGGTAAAATAGAAT TTTATTTAAGATTCTCATTGCTATTATTAAGATGTGGAAATTGTTAGCTG AAATGGTTTGGTTCTATTGCTGCAGCTAGTCTCTTTGTTCTTTTATGCAT TAAACAATGCTCAAGAGGCGACAGTGCCAGGAGATTTGTGGAATTTGAGG ACATTGTTTATTTAGCTAATATATCAATACTTAAAAATCAGTTTTCTCTT TTTAAAGTCATATTAAGATGGTTCGACTTGGGAAAATATTGAAATCTTGC AAAATTTTGTCAACATTTTTTTTTTGGACTATATGGTGAAACTAAATGCA ATGGTGTAGCACATGATTGTGGTGCCAAATAATCAATTTGTTTATTTATG TTTGTTTTGTTTTCCTTCATTTGAAGACTTTTGTCACATCTATATGTTGA TAACTTGATGTTCACCAATCTTTTATGTGGAATTTTAGTGATGTCTGGGA TTATGTTCCTTCAAGCTTCCTATCATCCTGCTGTAAGCTGTCAGCCACTA TGATGTTTTTACATGCAATGAAAGGAGAATTTTCTCTTTACTCATCCATA GGTTCTTGATGAAAGCAATTGAAATTCTTAACTATCACTACTACCTTCAA GCTTTGATAGTACTTTGTTTGAATCTTTCCTTAACTTATCTTGTTTTGAA TCAGCAATAGTAAAATGGTCAGTTAAGTTGGACCCATTTCTTTTTCTTTT TGGTATTTGCAATCAATTTCAGTGGAGATAGGTTGTGCCTTTGGGGTTCA AGGATTTGTCAAAATATGCCAAACTCTTGTATTTCTCATACTGATAGTTT TACCAGTCATGGGCTCTCATATGATCCTCTCTTATGACCTTTTTGGTGAC CAAGAAGGCTGCTATTTCAAGCCTCCAAGAATGGTTTAGTCATGCTGAAA TAAGCAACAATCCCATTCTTCGACTAATTGCCGGGACCATATACATGTAT GAGCAAGACTACAACGAGGCACTTAAGCATACCAACTCTGGGGGAAGTAT GGAACTGTAAGTACTGGTTTTCTTACTCATTGGAGATAGAGATGTTGTTC TGTTGTATATTTGATTCATCAAATCAAAATTTGCTGCTACTGTTTATTTT TTAAAATTTAAAATTACTTTATTGTTTCATACTCCAAGTAGGAATAAGTT TTTATTGTAAGTTATTCAAAACTAACTTTAACAGCATCTACTTATTAATT TTTAAGGTGCTAAGAAGTAAAATTAGTAATGCAATAAGTCAAAATTTTCA TTGTTGTTAATGCTGTGAATAGCTTATTGATCACCACCAAATTCAATTGC TTTTTTCAGGCATGCTTTGAATGTTCAGATATTCATTAAGATGCACAGGT CAGACTATGCTGAGAAACAACTCAAGATCATGCAACAAATCGATGAGGAC CATACACTTACACAACTTGCAAATGCATGGTTGGATCTGGCAATGGTAAT CCTGGTTTTTAACTGCATGATTGAAGTAATACTTAATTATTTTGTCTTAT TTGTTTGAAATTTTTTGTGACTTAGGGTGGTTCCAAGGTCCAGGAAGCAT ATCTTATTTTTCAGGACTTCTCTGAGAAGTATCAGATGACTGGAACAATT CTGAATGGCAAGGCTGTCTGTTGTATGCACATGAATCGCTTTGATGAGGC TGAGTCCTTATTGCTCGAAGCACTGAACAAGGTGAGCCTCTAAAATTATC TTGTTTCAGATAATCCAGTACAGTTTTCCCTAAAATTAGATAAAGAGTAT AACATGATGTTTCTTTACATCTGCGAGAAAAAATAATAAAAACATCTGGC TTCAGGATGCAAAGGATGCAGAAACTCTGGCCAACCTTGCTGTGTGCAGT CTTCACCTAGGCAAACCTTCATCACGATATCTCAAGTAAGTAACTGGTGA TCTTTTTTGGATTAAGGAATCCTAGATGACATCCCAAAGGCTAGATGACA TCTCAAATGAACACAATGTTTGCCTAGTTTTTTAATTAAGCGTAGCATAT ATAATATTACTTTCTATCTATCACTCTTTTTATGTTGCCAAACAAATATT ACTTTTTGTCATGAAATGACTTATAGAGACACAACATGATTGCTCTAAAT TTTACCACAAGCTTTAATGCTTAAATTTAGTTGAAAACTCTGAAACCGAA TGTTGATTGTACACCATATTGTCATAAGATTCTCTTGCCCATAACTAACA TCCCATATAGTCCTTGCTATTTTAACTGTTGTATATTAATAATGCTCACA TAACATGCTTGTACGAAGCCGTAGTATTGGCTTTGTTTACGGATTATTAC AGTGTGTCATGTGCCTACCACAGGTTTGGCATTGGTCGCAACAACCAGCA CATGCCACGCCAACTTGATTCTTCCCTAATTTGTGGTACAGCTGATCAGT CCATGGTTTACTACGATGATCATTCTAGGATGAGTCAGCTTTTTCCTTGA TGCTTCTGATTTGCTGGACCCTTTGCAGCAGAAGTGTAAAAGCTTGTTCG TCTAAATTATTAGGATACTATTGATTGTGGGATTTTTGGATCCTAAAGAA GCTAAAATAAAAAGTAGATCATGCTGAAAGTTAGAATAAAAACTATCTGC TTTGTTTTTAAGTGGCCAAAATAGTTGTCTTTTTAACATGTTAAAGATAA AATTAAAAAAGACTTTGTAACATCTTGTTTGCATAATGGAGTTTGTACTG ATGAGTATAGAATATGATAAGTAGATCATGCTGAAAGTTATAACAAAAAG CATCTGTGTTTCTTTTAAGTGGCCAACATAGTTGTCGTTTTAACCTGTTA AATATGTAAAAATGACTTTGTAACATTGAGTTCACATATTAGAGTTTGTA GTTTGTACTGATGAATACAAATTCTAACTTACTGGCCTTGCTTGTAAAAT AGCCCATGTCCAACCAAAAATGGCTTTGAAGCATTGAAATAACAAATATT TTCAATGTTTAGAGAGAAGTAGGCTATCAAATAATTATTGATACGTCAAT ATTTTCTCAAGAATTTTAACTTCTCATTTGTAGCCTTTGACCACACGAAT AGTTTTAGCAATGGGAGCATCACTTCTTTAACTTATCCAGCACCATACTA AGTTTGGTCCTTGCTCCTCGAAATGTTCAACTAGGGTATCAAAGTAGTTA TTTGGCTCTGAAACCAGAATCATATAGAGCATTCAAGCAAAATTAAAGTA AGGTTAAATGAAGTGTAGAGTTCTTGAGAGAGGCATAGTCCTGAATTCTT ACCAGTCTAAATTCATCTAGTTATACCAGCAGTAATTGTAACTCTTGTTT TGATACTTCATTAGTTTTCCCTATGAATATTTCTGTTAAGAATGATAAAA CCAAAACAGGCATCATTTAATTTGATCGCTTTGAAATAACTCCTGATTAG CAACTCTCAGGCTGTTCTCTGGCATTTTGTTTTGTCCATTGATGGCACTG ACCCACTTGGGTGGCTGTCATGGTGCTCATAAAAAAAATCAGACGGTCAA GTACGCTTTGACAGAAGTAGCTAAAATCTACCATTTTCAAATGGAATCTC ATTATGCCTTCTTCTTCGAGCAAATTGTGCCATATTTATTTATATCTGGA AATCATCCATCTTATAATAGCCGCTTATTTTCTCATACTTTGTTTCTGCA GTCAGTTGAAGTTGTCACATCCTGACCATATGCTTGTTAGATGTCTAGCA TCCGCTGAAGACAACTTTGATAGAGCTGTTCAATCCATTGCATGAGGTCT CAGATTATGATTTGCAAGAGAGTGGCATAGTAGTCTTCTGCTTAATTTTC CTTGAATTTTGACCATCTTGTTTTGTGATTGTACGACTAGTTGAATCTCA TCAATAAGCAACTTAGTGGGATTGGATTCACTAGCGATGTCCACTGATAT TTTCTGTTAGGCTGAACCATGAACTGAGTTCAGATATGCACTGTCATGCC TTGTTAGTCTCATCATCTATAAAAAGTTGCATCATTTCTGAAAAAA
back to top

Coding sequence (CDS) from alignment at chrUn_random:31335292..31340137+

>Ma00_t03810.1 ID=Ma00_t03810.1|Name=Ma00_t03810.1|organism=Musa acuminata|type=CDS|length=1005bp|location=Sequence derived from alignment at chrUn_random:31335292..31340137+ (Musa acuminata)
ATGATTGCAGGCATTTCTTCCTTATCGTACGTCTTCCGCTCGACAATCGA
AGACGAAGCTGAAGCGGACACAAAGCCCCTCGACTTCTTTTCCCGGGCTC
TCGATCTCGATCGGAGGAACCACCACGAAGCGGCGGTGATGGCGGCGACC
CCCGATCTTCTCTTCGGCCTGCGCAACAGCTTCTACTTGGGCGCCTACCA
AGCGGCCATCAACAGCAGCGACATCCCCAACCTCCCCGCCGACGACGCCC
TCGAGCGCGATGTACTCGTCCACCGATCCTACATCGCACTCGGATCCTAC
CAGCTAGTCATCAATGAGATTGATTCGTCGGCTCCTACTGCTCTCCAGGC
CGTCAAATTGCTCGCCCTTTACCTCTCTGAAAACAAGAAGGCTGCTATTT
CAAGCCTCCAAGAATGGTTTAGTCATGCTGAAATAAGCAACAATCCCATT
CTTCGACTAATTGCCGGGACCATATACATGTATGAGCAAGACTACAACGA
GGCACTTAAGCATACCAACTCTGGGGGAAGTATGGAACTGCATGCTTTGA
ATGTTCAGATATTCATTAAGATGCACAGGTCAGACTATGCTGAGAAACAA
CTCAAGATCATGCAACAAATCGATGAGGACCATACACTTACACAACTTGC
AAATGCATGGTTGGATCTGGCAATGGGTGGTTCCAAGGTCCAGGAAGCAT
ATCTTATTTTTCAGGACTTCTCTGAGAAGTATCAGATGACTGGAACAATT
CTGAATGGCAAGGCTGTCTGTTGTATGCACATGAATCGCTTTGATGAGGC
TGAGTCCTTATTGCTCGAAGCACTGAACAAGGATGCAAAGGATGCAGAAA
CTCTGGCCAACCTTGCTGTGTGCAGTCTTCACCTAGGCAAACCTTCATCA
CGATATCTCAATCAGTTGAAGTTGTCACATCCTGACCATATGCTTGTTAG
ATGTCTAGCATCCGCTGAAGACAACTTTGATAGAGCTGTTCAATCCATTG
CATGA
back to top