Overview
NameMa00_t03800.1
Unique NameMa00_t03800.1
TypemRNA
OrganismMusa acuminata (DH Pahang)
Sequence length1206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chrUn_randomchromosomechrUn_random:31332793..31333998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
manual_curation2015-04-05 .281687
Properties
Property NameValue
OriginRefSeq:rna25284
Old locus tagGSMUA_Achr7G16820_001
Old locus taggene18754
Previous locationchr7:17308446..17309651
NotePutative Zinc finger CCCH domain-containing protein 24
Cross References
External references for this mRNA
DatabaseAccession
GeneID103992015
GenbankXM_009411569.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ma00_g03800Ma00_g03800Musa acuminatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ma00_p03800.1Ma00_p03800.1Musa acuminatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2011600auto2011600Musa acuminataCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2011601auto2011601Musa acuminataexon


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ma00_t03800.1 ID=Ma00_t03800.1|Name=Ma00_t03800.1|organism=Musa acuminata|type=mRNA|length=1206bp
ATGGATCATGTCAATCTCGATTGCCGAGACGACTCCTGCAGCCTTCTCCC
CGTCGTGGCTGATGGCGATCTCGAGGGCTGTAAGTGCTGCATACATGAAG
TGACCGGCTGCAAAGCGACTCAGTTCCCCGGGGCATCGTCGCCTTGTTCC
GCCGCGGCGGACAAATTGGTGACGACGACGAAGGAGTACCCCGCCGACCC
GTTCCTCCTCGACGTCAACGACAGCAACAGCCTCTACGGCACCGATGAGT
TCCGCATGTTCTGCTTCAAGGTGCTGCCATGCTCCCGGGCGTACTTCCAC
GACTGGACTGCGTGCCCCTTCGGCCACCCTGGCGAGAGCGCGAGGAGGCG
CGACCCGAGGAAGTACGCGTACAGCTGCTTCCCTTGCCTCCCCTTCAGGA
GAGGCGCGTGCCCCAAGGGCGACATGTGCGAGTTCGCGCACGGCGTTTTC
GAGCGGTGGCTCCACCCCATGCAGTACCGCACCAGGATGTGCAAGGATGG
GACGCACTGCGCTCGGCGCGTGTGCTTCTTTGCGCACACGTCGGAGGAGC
TCCGCGCCTCGCTCGAGTGCTCGCCTTTTCTGCAGCTCCCTTGTGCAAAT
ATAGCATGGCCGGAACTGCATCTTCTTGCTCTCGGCGATCTCCATCGTGT
CAGAAATCGATCGTCTCTGCTCAATGTGGATGACCTCGCCCTGCTTCCTG
ATTGCAGACTTCAGCAGATCAACGATTTGAGCTTGTTGCTTGGCCAAGAG
TACCCAGCAACTTCCTTAGCTGGAAGGAAATGCAGTAGTAGCCTCTTCTC
TGCTGAGATATCTTCGCCACCGGGGTTCACATCAGCTCATCAGCTCGCAT
CGTCTCCGCAGCAGCATCAGAGTCCGCTGTTCTCTCCCAGAGCTATGAAT
CATGGTCATGATGGGAATTCCGCACCTTGCATCATTGAATGGAGTTCCTG
TCCCAGCTATCCGATCCCTGCTGCACTGACTCCACAGGAGAGACTGCAGC
GACATCTACCGGCCCTGAGCGCTGTTGATGATGGATCGACTTCCATTACC
GGATCATCTGACTCCTCTCGGACCAACGAGTGGATTGCACTATCGAAGGA
GATAGAGCAGGAGGTGAATGGTGAGGGGTTGGGACCGCATAAGCGGTCGA
CGTCGTTTGAACTGGGATGCCGCAGTGAGAAGGAGGCTGATGTCTCCTGG
GTGTAA
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protein sequence of Ma00_p03800.1

>Ma00_p03800.1 ID=Ma00_p03800.1|Name=Ma00_p03800.1|organism=Musa acuminata|type=polypeptide|length=402bp
MDHVNLDCRDDSCSLLPVVADGDLEGCKCCIHEVTGCKATQFPGASSPCS
AAADKLVTTTKEYPADPFLLDVNDSNSLYGTDEFRMFCFKVLPCSRAYFH
DWTACPFGHPGESARRRDPRKYAYSCFPCLPFRRGACPKGDMCEFAHGVF
ERWLHPMQYRTRMCKDGTHCARRVCFFAHTSEELRASLECSPFLQLPCAN
IAWPELHLLALGDLHRVRNRSSLLNVDDLALLPDCRLQQINDLSLLLGQE
YPATSLAGRKCSSSLFSAEISSPPGFTSAHQLASSPQQHQSPLFSPRAMN
HGHDGNSAPCIIEWSSCPSYPIPAALTPQERLQRHLPALSAVDDGSTSIT
GSSDSSRTNEWIALSKEIEQEVNGEGLGPHKRSTSFELGCRSEKEADVSW
V*
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mRNA from alignment at chrUn_random:31332793..31333998+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ma00_t03800.1 ID=Ma00_t03800.1|Name=Ma00_t03800.1|organism=Musa acuminata|type=mRNA|length=1206bp|location=Sequence derived from alignment at chrUn_random:31332793..31333998+ (Musa acuminata)
ATGGATCATGTCAATCTCGATTGCCGAGACGACTCCTGCAGCCTTCTCCC CGTCGTGGCTGATGGCGATCTCGAGGGCTGTAAGTGCTGCATACATGAAG TGACCGGCTGCAAAGCGACTCAGTTCCCCGGGGCATCGTCGCCTTGTTCC GCCGCGGCGGACAAATTGGTGACGACGACGAAGGAGTACCCCGCCGACCC GTTCCTCCTCGACGTCAACGACAGCAACAGCCTCTACGGCACCGATGAGT TCCGCATGTTCTGCTTCAAGGTGCTGCCATGCTCCCGGGCGTACTTCCAC GACTGGACTGCGTGCCCCTTCGGCCACCCTGGCGAGAGCGCGAGGAGGCG CGACCCGAGGAAGTACGCGTACAGCTGCTTCCCTTGCCTCCCCTTCAGGA GAGGCGCGTGCCCCAAGGGCGACATGTGCGAGTTCGCGCACGGCGTTTTC GAGCGGTGGCTCCACCCCATGCAGTACCGCACCAGGATGTGCAAGGATGG GACGCACTGCGCTCGGCGCGTGTGCTTCTTTGCGCACACGTCGGAGGAGC TCCGCGCCTCGCTCGAGTGCTCGCCTTTTCTGCAGCTCCCTTGTGCAAAT ATAGCATGGCCGGAACTGCATCTTCTTGCTCTCGGCGATCTCCATCGTGT CAGAAATCGATCGTCTCTGCTCAATGTGGATGACCTCGCCCTGCTTCCTG ATTGCAGACTTCAGCAGATCAACGATTTGAGCTTGTTGCTTGGCCAAGAG TACCCAGCAACTTCCTTAGCTGGAAGGAAATGCAGTAGTAGCCTCTTCTC TGCTGAGATATCTTCGCCACCGGGGTTCACATCAGCTCATCAGCTCGCAT CGTCTCCGCAGCAGCATCAGAGTCCGCTGTTCTCTCCCAGAGCTATGAAT CATGGTCATGATGGGAATTCCGCACCTTGCATCATTGAATGGAGTTCCTG TCCCAGCTATCCGATCCCTGCTGCACTGACTCCACAGGAGAGACTGCAGC GACATCTACCGGCCCTGAGCGCTGTTGATGATGGATCGACTTCCATTACC GGATCATCTGACTCCTCTCGGACCAACGAGTGGATTGCACTATCGAAGGA GATAGAGCAGGAGGTGAATGGTGAGGGGTTGGGACCGCATAAGCGGTCGA CGTCGTTTGAACTGGGATGCCGCAGTGAGAAGGAGGCTGATGTCTCCTGG GTGTAA
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Coding sequence (CDS) from alignment at chrUn_random:31332793..31333998+

>Ma00_t03800.1 ID=Ma00_t03800.1|Name=Ma00_t03800.1|organism=Musa acuminata|type=CDS|length=1206bp|location=Sequence derived from alignment at chrUn_random:31332793..31333998+ (Musa acuminata)
ATGGATCATGTCAATCTCGATTGCCGAGACGACTCCTGCAGCCTTCTCCC
CGTCGTGGCTGATGGCGATCTCGAGGGCTGTAAGTGCTGCATACATGAAG
TGACCGGCTGCAAAGCGACTCAGTTCCCCGGGGCATCGTCGCCTTGTTCC
GCCGCGGCGGACAAATTGGTGACGACGACGAAGGAGTACCCCGCCGACCC
GTTCCTCCTCGACGTCAACGACAGCAACAGCCTCTACGGCACCGATGAGT
TCCGCATGTTCTGCTTCAAGGTGCTGCCATGCTCCCGGGCGTACTTCCAC
GACTGGACTGCGTGCCCCTTCGGCCACCCTGGCGAGAGCGCGAGGAGGCG
CGACCCGAGGAAGTACGCGTACAGCTGCTTCCCTTGCCTCCCCTTCAGGA
GAGGCGCGTGCCCCAAGGGCGACATGTGCGAGTTCGCGCACGGCGTTTTC
GAGCGGTGGCTCCACCCCATGCAGTACCGCACCAGGATGTGCAAGGATGG
GACGCACTGCGCTCGGCGCGTGTGCTTCTTTGCGCACACGTCGGAGGAGC
TCCGCGCCTCGCTCGAGTGCTCGCCTTTTCTGCAGCTCCCTTGTGCAAAT
ATAGCATGGCCGGAACTGCATCTTCTTGCTCTCGGCGATCTCCATCGTGT
CAGAAATCGATCGTCTCTGCTCAATGTGGATGACCTCGCCCTGCTTCCTG
ATTGCAGACTTCAGCAGATCAACGATTTGAGCTTGTTGCTTGGCCAAGAG
TACCCAGCAACTTCCTTAGCTGGAAGGAAATGCAGTAGTAGCCTCTTCTC
TGCTGAGATATCTTCGCCACCGGGGTTCACATCAGCTCATCAGCTCGCAT
CGTCTCCGCAGCAGCATCAGAGTCCGCTGTTCTCTCCCAGAGCTATGAAT
CATGGTCATGATGGGAATTCCGCACCTTGCATCATTGAATGGAGTTCCTG
TCCCAGCTATCCGATCCCTGCTGCACTGACTCCACAGGAGAGACTGCAGC
GACATCTACCGGCCCTGAGCGCTGTTGATGATGGATCGACTTCCATTACC
GGATCATCTGACTCCTCTCGGACCAACGAGTGGATTGCACTATCGAAGGA
GATAGAGCAGGAGGTGAATGGTGAGGGGTTGGGACCGCATAAGCGGTCGA
CGTCGTTTGAACTGGGATGCCGCAGTGAGAAGGAGGCTGATGTCTCCTGG
GTGTAA
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