Overview
NameMa00_t00160.1
Unique NameMa00_t00160.1
TypemRNA
OrganismMusa acuminata (DH Pahang)
Sequence length1047
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chrUn_randomchromosomechrUn_random:183582..185060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
manual_curation2015-04-05 .281687
Properties
Property NameValue
NotePutative DnaJ protein homolog
OriginCIRAD:GSMUA_Achr3T15480_001
Old locus tagGSMUA_Achr3G15480_001
Old locus tagGSMUA_Achr3G15480_001
Old locus taggene6190
Sequences
The following sequences are available for this feature:

mRNA sequence

>Ma00_t00160.1 ID=Ma00_t00160.1|Name=Ma00_t00160.1|organism=Musa acuminata|type=mRNA|length=1047bp
ATGGGAGCGGACTACTACAAGATCCTGGGGGTGGACAAGAGCGCCAAGGA
CGACGATCTCAAGAAGGCCTATCGGAAGCTGGCCATGAAGTGGCACCCGG
ACAAGAATCCCAACAACAAGAACGAAGCCGAGGCCAAGTTCAAGCAGATC
TCCGAGGCCTACGAGGTATTAAGCGATCCGCAGAAGCGCGCCATCTACGA
CCAGTACGGAGAGGAAGGGCTGAAGGGGCAAGTCCCACCTCCCGAGGCCA
ACGGGGGCGCCACCTTCTTCTCCGGCGGCGGCGACGGTCCCACGGTGTTC
CGGTTCAATCCGCGGAATGCCGACGACATATTCGCGGAGTTCTTCGGCTT
CTCGAGCCCGCTTGGGGACATGGGAGGCGCGAGAAGCAACGGCGGCGTGA
GAGGAGGGACCCGGTTCTCTTCCGGGGTTTTTGGCGACGACTTGTTCGGG
TCGGCCTTCGGCGGCGGTGTCGAGGGGCCGATGAACTCGCGCCGGCCGCA
GAAGGCGGCGCCGATCGAGAACCTGCTGCCCTGCAGCCTGGAGGAGCTAT
ACAAAGGCACCACCAAGAGGATGAAGATCTCCAGGGAAATCGCTGACATG
AGCGGGAAAACGATGCCGGTGGAGGAGATCCTGACCATCGATATAAAGCC
CGGTTGGAAGAAGGGCACCAAGATCACATTCGAGGAGAAGGGGAACGAAC
GGCCCAACGTCATCCCCGCCGACGTCGTCTTCATCATAGACGAGAAGCCG
CATCCCGTGTTCACCAGGGAAGGCAACGACCTGGTCACCACGAAGAAGAT
ATCCCTCGCCGAAGCCCTCACCGGCTACACCGCCCACCTGACAACGCTTG
ACGGCAGAAGCCTCATCGTGCCCGTCGACTCCGTGATCCGTCCCGGCTAC
GAGGAGGTTGTGCCCAAGGAGGGCATGCCGCTGCCGAAGGATCCATCAAG
GAAGGGAAACCTGAGAATCAAGTTCGACATCAAGTTCCCGACGAGGCTCA
CCTCGGAGCAGAAGGCCGGTATCAAACGATTGCTGCCGTCACCGTGA
back to top

protein sequence of Ma00_p00160.1

>Ma00_p00160.1 ID=Ma00_p00160.1|Name=Ma00_p00160.1|organism=Musa acuminata|type=polypeptide|length=349bp
MGADYYKILGVDKSAKDDDLKKAYRKLAMKWHPDKNPNNKNEAEAKFKQI
SEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPEANGGATFFSGGGDGPTVF
RFNPRNADDIFAEFFGFSSPLGDMGGARSNGGVRGGTRFSSGVFGDDLFG
SAFGGGVEGPMNSRRPQKAAPIENLLPCSLEELYKGTTKRMKISREIADM
SGKTMPVEEILTIDIKPGWKKGTKITFEEKGNERPNVIPADVVFIIDEKP
HPVFTREGNDLVTTKKISLAEALTGYTAHLTTLDGRSLIVPVDSVIRPGY
EEVVPKEGMPLPKDPSRKGNLRIKFDIKFPTRLTSEQKAGIKRLLPSP*
back to top

mRNA from alignment at chrUn_random:183582..185060-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ma00_t00160.1 ID=Ma00_t00160.1|Name=Ma00_t00160.1|organism=Musa acuminata|type=mRNA|length=1479bp|location=Sequence derived from alignment at chrUn_random:183582..185060- (Musa acuminata)
GAAAGCTTCGGTAGCTGCAGCGAAGAACAAGAAGAGTGAGTGAGAGGAAA GAAGAGTGAGGTGAGAGGAGTGGGGAGAGGGGAGGGTAACGGAGATGGGA GCGGACTACTACAAGATCCTGGGGGTGGACAAGAGCGCCAAGGACGACGA TCTCAAGAAGGCCTATCGGAAGCTGGCCATGAAGTGGCACCCGGACAAGA ATCCCAACAACAAGAACGAAGCCGAGGCCAAGTTCAAGCAGATCTCCGAG GCCTACGAGGTATTCCTCTCTCCCTTTCCTTTTCTCCTCCCCCAATTCTT CTCGCATGCACTCGGAAACATCGATATCGATTCCCTTTCTAAATTGTAGG TTTTAATCGGTCCTCGTCGTTCATTCGATTGTTTGTAACCAAATCCATCA TAAATCGTCATGGATTGTTTTTGATATGTCTGTAGATTAATCGATTTGTC CGCTGAAGATGGATCTTTAAGGAGTTCTCTCTTTTGTCCTTAACAGGTAT TAAGCGATCCGCAGAAGCGCGCCATCTACGACCAGTACGGAGAGGAAGGG CTGAAGGGGCAAGTCCCACCTCCCGAGGCCAACGGGGGCGCCACCTTCTT CTCCGGCGGCGGCGACGGTCCCACGGTGTTCCGGTTCAATCCGCGGAATG CCGACGACATATTCGCGGAGTTCTTCGGCTTCTCGAGCCCGCTTGGGGAC ATGGGAGGCGCGAGAAGCAACGGCGGCGTGAGAGGAGGGACCCGGTTCTC TTCCGGGGTTTTTGGCGACGACTTGTTCGGGTCGGCCTTCGGCGGCGGTG TCGAGGGGCCGATGAACTCGCGCCGGCCGCAGAAGGCGGCGCCGATCGAG AACCTGCTGCCCTGCAGCCTGGAGGAGCTATACAAAGGCACCACCAAGAG GATGAAGATCTCCAGGGAAATCGCTGACATGAGCGGGTAAATCTCCTTTC CTTGCTTCTCATTGCAGAACTCCTCCTCGTCCGTCTTCTCTTCTCTCGTA AACAATGAGATCACTGACTCGATCATCCGCGTTTCAGGAAAACGATGCCG GTGGAGGAGATCCTGACCATCGATATAAAGCCCGGTTGGAAGAAGGGCAC CAAGATCACATTCGAGGAGAAGGGGAACGAACGGCCCAACGTCATCCCCG CCGACGTCGTCTTCATCATAGACGAGAAGCCGCATCCCGTGTTCACCAGG GAAGGCAACGACCTGGTCACCACGAAGAAGATATCCCTCGCCGAAGCCCT CACCGGCTACACCGCCCACCTGACAACGCTTGACGGCAGAAGCCTCATCG TGCCCGTCGACTCCGTGATCCGTCCCGGCTACGAGGAGGTTGTGCCCAAG GAGGGCATGCCGCTGCCGAAGGATCCATCAAGGAAGGGAAACCTGAGAAT CAAGTTCGACATCAAGTTCCCGACGAGGCTCACCTCGGAGCAGAAGGCCG GTATCAAACGATTGCTGCCGTCACCGTGA
back to top

Coding sequence (CDS) from alignment at chrUn_random:183582..185060-

>Ma00_t00160.1 ID=Ma00_t00160.1|Name=Ma00_t00160.1|organism=Musa acuminata|type=CDS|length=1047bp|location=Sequence derived from alignment at chrUn_random:183582..185060- (Musa acuminata)
ATGGGAGCGGACTACTACAAGATCCTGGGGGTGGACAAGAGCGCCAAGGA
CGACGATCTCAAGAAGGCCTATCGGAAGCTGGCCATGAAGTGGCACCCGG
ACAAGAATCCCAACAACAAGAACGAAGCCGAGGCCAAGTTCAAGCAGATC
TCCGAGGCCTACGAGGTATTAAGCGATCCGCAGAAGCGCGCCATCTACGA
CCAGTACGGAGAGGAAGGGCTGAAGGGGCAAGTCCCACCTCCCGAGGCCA
ACGGGGGCGCCACCTTCTTCTCCGGCGGCGGCGACGGTCCCACGGTGTTC
CGGTTCAATCCGCGGAATGCCGACGACATATTCGCGGAGTTCTTCGGCTT
CTCGAGCCCGCTTGGGGACATGGGAGGCGCGAGAAGCAACGGCGGCGTGA
GAGGAGGGACCCGGTTCTCTTCCGGGGTTTTTGGCGACGACTTGTTCGGG
TCGGCCTTCGGCGGCGGTGTCGAGGGGCCGATGAACTCGCGCCGGCCGCA
GAAGGCGGCGCCGATCGAGAACCTGCTGCCCTGCAGCCTGGAGGAGCTAT
ACAAAGGCACCACCAAGAGGATGAAGATCTCCAGGGAAATCGCTGACATG
AGCGGGAAAACGATGCCGGTGGAGGAGATCCTGACCATCGATATAAAGCC
CGGTTGGAAGAAGGGCACCAAGATCACATTCGAGGAGAAGGGGAACGAAC
GGCCCAACGTCATCCCCGCCGACGTCGTCTTCATCATAGACGAGAAGCCG
CATCCCGTGTTCACCAGGGAAGGCAACGACCTGGTCACCACGAAGAAGAT
ATCCCTCGCCGAAGCCCTCACCGGCTACACCGCCCACCTGACAACGCTTG
ACGGCAGAAGCCTCATCGTGCCCGTCGACTCCGTGATCCGTCCCGGCTAC
GAGGAGGTTGTGCCCAAGGAGGGCATGCCGCTGCCGAAGGATCCATCAAG
GAAGGGAAACCTGAGAATCAAGTTCGACATCAAGTTCCCGACGAGGCTCA
CCTCGGAGCAGAAGGCCGGTATCAAACGATTGCTGCCGTCACCGTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ma00_g00160Ma00_g00160Musa acuminatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ma00_p00160.1Ma00_p00160.1Musa acuminatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2006508auto2006508Musa acuminataCDS
CDS-auto2006509auto2006509Musa acuminataCDS
CDS-auto2006510auto2006510Musa acuminataCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2006511auto2006511Musa acuminataexon
exon-auto2006512auto2006512Musa acuminataexon
exon-auto2006513auto2006513Musa acuminataexon