Overview
NameMa00_t00030.1
Unique NameMa00_t00030.1
TypemRNA
OrganismMusa acuminata (DH Pahang)
Sequence length882
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chrUn_randomchromosomechrUn_random:28995..30810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
manual_curation2015-04-05 .281687
Properties
Property NameValue
NotePutative Probable WRKY transcription factor 8
OriginRefSeq:rna43951
Old locus tagGSMUA_AchrUn_randomG17930_001
Old locus taggene32598
Previous locationchrUn_random:84867134..84868949
Cross References
External references for this mRNA
DatabaseAccession
GeneID103974353
GenbankXM_009389159.1
Sequences
The following sequences are available for this feature:

mRNA sequence

>Ma00_t00030.1 ID=Ma00_t00030.1|Name=Ma00_t00030.1|organism=Musa acuminata|type=mRNA|length=882bp
ATGTCCGGAGACGAGGCCGACCACTATGGCCGCCGCCATGATCACTTCCC
TTTCCACGGTGAACCGTCGTCGGTGTCGCCGCAGAAGCCGGGCAGCAGCA
GCAGCGGTGCAGCCAACAGTCTGCAGGTTTCCGACCTCAAAACGCTATCG
CCGTTCCTGAGCTTCACCGACTACCTCCACGACTCGCCGGTGGACTTCCA
CAATCTGGTTCCGGCCTTCGATGACCCGAGCCCTAGGTCACACCTGCTCG
GCGGTGCACATGAGCCGTGTGAATTGTTGGCGGGCGGCGACGGCACGGCT
CCGGTGACTCCCAACTCCTCGATGACTTCGTCGTCGACGGAAGCGGCAGG
GGAAGAAGACTTGGGTGCCCGCAAGACGGATCGGCCGAAGCAGGAGGAGG
GAGAGGAGAAGCAGGCAGCAGGGGGTGAAGAAGGGCGTGACAAGTTCAAG
AAAGTGAACAAGCCAAGGAAGAAAGGCGAGAGAAGGCAGAGGGAGCCACG
GATTGCATTCATGACCAAGAGCGAGGTTGATCATCTCGAAGACGGATATC
GATGGAGGAAGTACGGGCAGAAGGCAGTCAAGAACAGCCCATATCCCAGA
AGCTACTACCGGTGCACGGCGCCCAAGTGCAACGTGAAGAAGAGAGTGGA
GAGATCGTATCAGGATTCGTCGGTCGTGGTCACCACCTACGAAGGGCAGC
ACACTCATCACAGCCCAGTCAATCTTCGCTTAGCGCCATCTCCACCGACG
ACGAGCTTTCGCGGCGACCTGCTGTCGCATCAGCCGTCCCCCGTGAACAG
TAACATTAACCAGCAAGCCGAAGGCCATGGTCTCTTGCAAGACATCGTCC
CTACTCTCGTCCACAGCAAGCAGCGACAGTAA
back to top

protein sequence of Ma00_p00030.1

>Ma00_p00030.1 ID=Ma00_p00030.1|Name=Ma00_p00030.1|organism=Musa acuminata|type=polypeptide|length=294bp
MSGDEADHYGRRHDHFPFHGEPSSVSPQKPGSSSSGAANSLQVSDLKTLS
PFLSFTDYLHDSPVDFHNLVPAFDDPSPRSHLLGGAHEPCELLAGGDGTA
PVTPNSSMTSSSTEAAGEEDLGARKTDRPKQEEGEEKQAAGGEEGRDKFK
KVNKPRKKGERRQREPRIAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPR
SYYRCTAPKCNVKKRVERSYQDSSVVVTTYEGQHTHHSPVNLRLAPSPPT
TSFRGDLLSHQPSPVNSNINQQAEGHGLLQDIVPTLVHSKQRQ*
back to top

mRNA from alignment at chrUn_random:28995..30810-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ma00_t00030.1 ID=Ma00_t00030.1|Name=Ma00_t00030.1|organism=Musa acuminata|type=mRNA|length=1816bp|location=Sequence derived from alignment at chrUn_random:28995..30810- (Musa acuminata)
GCTCATCGTCAACGATTCTTGCGTCCTGAAAACGTCCACTTATCTATGTG CACCAAAACAAAAGAAGGAAGGCAAAAGCCACACTCTTCCTTCCACTGAC TGCCTTCTCTCCCTATGTCCGGAGACGAGGCCGACCACTATGGCCGCCGC CATGATCACTTCCCTTTCCACGGTGAACCGTCGTCGGTGTCGCCGCAGAA GCCGGGCAGCAGCAGCAGCGGTGCAGCCAACAGTCTGCAGGTTTCCGACC TCAAAACGCTATCGCCGTTCCTGAGCTTCACCGACTACCTCCACGACTCG CCGGTGGACTTCCACAATCTGGTTCCGGCCTTCGATGACCCGAGCCCTAG GTCACACCTGCTCGGCGGTGCACATGAGCCGTGTGAATTGTTGGCGGGCG GCGACGGCACGGCTCCGGTGACTCCCAACTCCTCGATGACTTCGTCGTCG ACGGAAGCGGCAGGGGAAGAAGACTTGGGTGCCCGCAAGACGGATCGGCC GAAGCAGGAGGAGGGAGAGGAGAAGCAGGCAGCAGGGGGTGAAGAAGGGC GTGACAAGTTCAAGAAAGTGTAGGTTTTGATCGGTTCTGTGCATGTTTTG CTTGCTCTCCTTTCTCTGTTCTTGATTGGTGGCAGTCAATTATGATAGGC GGCTTAGAAATGAGTAGTTTATATGCTAATTGCTTTTGCCTTTTGGACTT GTTGTTCTACTGGGATAAGAACACTTGTCTAGCGTCTAGGGTTTCTCTCC TCCACTAGCAGAACAAATCACGGTTTGTAGGGTTTCCCTATTCCCTTTGA TCTGCTTATGATCTGCCATGGTGCAATTTAGGATGAGAGATGCACGGGTC TCCGGAACCAGAGCTGAAAGAGGTGGTAGTGTGAACTGTGATGTGATCTT TTGATGTGGAACAGGAACAAGCCAAGGAAGAAAGGCGAGAGAAGGCAGAG GGAGCCACGGATTGCATTCATGACCAAGAGCGAGGTTGATCATCTCGAAG ACGGATATCGATGGAGGAAGTACGGGCAGAAGGCAGTCAAGAACAGCCCA TATCCCAGGTCAGTACGTATACTGCGCCAGCTTCCAGCTTCCCATTACAC CATCTCCTTTGCTAACACATCAGCCGCAGAAGCTACTACCGGTGCACGGC GCCCAAGTGCAACGTGAAGAAGAGAGTGGAGAGATCGTATCAGGATTCGT CGGTCGTGGTCACCACCTACGAAGGGCAGCACACTCATCACAGCCCAGTC AATCTTCGCTTAGCGCCATCTCCACCGACGACGAGCTTTCGCGGCGACCT GCTGTCGCATCAGCCGTCCCCCGTGAACAGTAACATTAACCAGCAAGCCG AAGGCCATGGTCTCTTGCAAGACATCGTCCCTACTCTCGTCCACAGCAAG CAGCGACAGTAACATACTGCTTTACTCCCTCATGCTGCTTGTGTGTGTTC ATAAGATGGGTATGAATCGACGATGTAGAAACAGGGAAACTCTAATCGAT TCTGGGCTCACTCTATGTTTAGCCTCCGTGTAAGGACACTAATGATTCAG AGAAGCAGGCTGGGAGATCAGAGTGAGTGACATGGCTTTTCTGCGTGAGG AATCCAAGCTTTTGGTACGGCTACATTAAATGCTTGGCCATGGTTGGTCT TGTTCTTGTTTGGTAGCTGGAGTTTATGGTGAAAGCGTCAGTTGTTTACG AAGGGGAATTTGGAGTCATGAATGCTATTGGCTCCATTTCTTCTTCATGA TTGCAGATGACAACAGCCAGAACTCGTACACATTATTACATTTTGCTTAT CGAATCTTAAAGGTGA
back to top

Coding sequence (CDS) from alignment at chrUn_random:28995..30810-

>Ma00_t00030.1 ID=Ma00_t00030.1|Name=Ma00_t00030.1|organism=Musa acuminata|type=CDS|length=882bp|location=Sequence derived from alignment at chrUn_random:28995..30810- (Musa acuminata)
ATGTCCGGAGACGAGGCCGACCACTATGGCCGCCGCCATGATCACTTCCC
TTTCCACGGTGAACCGTCGTCGGTGTCGCCGCAGAAGCCGGGCAGCAGCA
GCAGCGGTGCAGCCAACAGTCTGCAGGTTTCCGACCTCAAAACGCTATCG
CCGTTCCTGAGCTTCACCGACTACCTCCACGACTCGCCGGTGGACTTCCA
CAATCTGGTTCCGGCCTTCGATGACCCGAGCCCTAGGTCACACCTGCTCG
GCGGTGCACATGAGCCGTGTGAATTGTTGGCGGGCGGCGACGGCACGGCT
CCGGTGACTCCCAACTCCTCGATGACTTCGTCGTCGACGGAAGCGGCAGG
GGAAGAAGACTTGGGTGCCCGCAAGACGGATCGGCCGAAGCAGGAGGAGG
GAGAGGAGAAGCAGGCAGCAGGGGGTGAAGAAGGGCGTGACAAGTTCAAG
AAAGTGAACAAGCCAAGGAAGAAAGGCGAGAGAAGGCAGAGGGAGCCACG
GATTGCATTCATGACCAAGAGCGAGGTTGATCATCTCGAAGACGGATATC
GATGGAGGAAGTACGGGCAGAAGGCAGTCAAGAACAGCCCATATCCCAGA
AGCTACTACCGGTGCACGGCGCCCAAGTGCAACGTGAAGAAGAGAGTGGA
GAGATCGTATCAGGATTCGTCGGTCGTGGTCACCACCTACGAAGGGCAGC
ACACTCATCACAGCCCAGTCAATCTTCGCTTAGCGCCATCTCCACCGACG
ACGAGCTTTCGCGGCGACCTGCTGTCGCATCAGCCGTCCCCCGTGAACAG
TAACATTAACCAGCAAGCCGAAGGCCATGGTCTCTTGCAAGACATCGTCC
CTACTCTCGTCCACAGCAAGCAGCGACAGTAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ma00_g00030Ma00_g00030Musa acuminatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ma00_p00030.1Ma00_p00030.1Musa acuminatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2006351auto2006351Musa acuminataCDS
CDS-auto2006352auto2006352Musa acuminataCDS
CDS-auto2006353auto2006353Musa acuminataCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2006354auto2006354Musa acuminataexon
exon-auto2006355auto2006355Musa acuminataexon
exon-auto2006356auto2006356Musa acuminataexon