Genome annotation v1
The following resources were integrated to automatically build Musa acuminata gene models using GAZE: ab initio gene predictions from Geneid, SNAP and FGENESH; Genewise alignments of the UniProt database; Est2genome alignments of full-length cDNAs from six tissue samples of DH Pahang and a collection of 6,888,879 monocotyledon messenger RNAs from the EMBL database and finally Gmorse models derived from RNA-Seq reads.
Additional Analysis resources
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The following resources were integrated to automatically build Musa acuminata gene models using GAZE: ab initio gene predictions from Geneid, SNAP and FGENESH; Genewise alignments of the UniProt database; Est2genome alignments of full-length cDNAs from six tissue samples of DH Pahang and a collection of 6,888,879 monocotyledon messenger RNAs from the EMBL database and finally Gmorse models derived from RNA-Seq reads.

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DH Pahang Assembly v1

1. Sequencing Method

Genomic sequence was generated using a whole genome shotgun approach using Sanger technology sequencing (ABI 3730xl) and next generation sequencers (Roche/454 GSFLX and Illumina GAIIx)

 Number of readsNumber of basesCoverageInsert size(bp)
Sanger2,049,4571,537,092,7502.9410,000
Sanger (BAC ends)90,54267,839,0000.13110,000
Single Roche/45427,495,411[more] Subscribe to Banana Genome Hub RSS