Available Tools
Primer Blaster
This tool was designed to test the specificity of any primer pair on the musa genome by using BLAST. Make sure primers have the same id in both cases. As a result, a table displays all tested primers with primer name and positions, location on chromosome, amplicon size and number of hits on the musa genome. If the primer pair is really specific, this status is clearly marked as ‘ok’ in the table.
Gigwa
Gigwa is a web-based tool for the exploration of large amounts of genotyping data.
Locus Converter
This tool allows to convert locus tags names between version of the genome assemblies. It supports conversion between v1 and v2 of the DH-Pahang assembly. You can search either by legacy identifiers (GSMUA_Achr3G27160_001) or by RefSeq identifiers (gene708).
GO enrichment
Perform GO enrichment on list of genes
Genomes
Musa cavendish (Baxijiao)
Baxijiao (AAA, Cavendish), with a basic chromosome number of x=11 (2n=3x=33), belongs to the group of banana cultivars that the most commo read more
Musa troglodytarum (Utafun)
Musa troglodytarum (Fe'i banana) ‘Utafun’ (10.18730/9KVB3) is Fe’i banana collected from Papua New Gu read more
Musa textilis (Abaca)
Musa textilis ‘Abaca’ (10.18730/9J98W) is an important industrial crop cultivated mainly in Philippines, Ecu read more
Ensete ventricosum (Enset)
Ensete ventricosum, also known as the Ethiopian banana or enset, is a perennial plant native to Ethiopia and parts of East Africa. It belo read more
Musella lasiocarpa (Golden lotus banana)
Musella lasiocarpa, also known as Chinese dwarf banana or golden lotus banana, is a species of flowering plant in the banana family (Musaceae). It read more
Musa acuminata (Maia oa)
The selected accession, named 'Maia Oa' belongs to the subspecies of Musa acuminata spp. zebrina native to south-east Asia.
The genome seque read more
Musa acuminata (Calcutta 4)
The selected accession, named Calcutta 4 belongs to the subspecies of Musa acuminata burmannica native to south-east Asia. According to MusaPedia, read more
Musa acuminata (Banksii)
The selected accession, named 'Banksii' belongs to the subspecies of Musa acuminata spp. banksii native to south-east Asia in Papua New Guinea. Ban read more
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